PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008276.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 357aa    MW: 38308.6 Da    PI: 10.6692
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008276.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.3e-29285342359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+v+++tYe eH+h+
  Aco008276.1 285 DEYSWRKYGQKPIKGSPHPRNYYKCSSVrGCPARKHVERAMDDPTVLVVTYEWEHRHT 342
                  9*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-6261281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-31271342IPR003657WRKY domain
PROSITE profilePS5081128.644278344IPR003657WRKY domain
SuperFamilySSF1182903.66E-25281343IPR003657WRKY domain
SMARTSM007741.5E-33283343IPR003657WRKY domain
PfamPF031067.8E-25285341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTVDLMGYAK MDEQMAIQEA AAAGLRSLER LVHQLSRRGP SEPFDCKEIA DQTVSKFRKV  60
ISILDRTGHA RFRRGPVPVR VPVQQQTLDE PRSQSQPQPQ TPTLAPPPSI APPPPPPPPP  120
PPQTLTLDFT KPSPAAARSG HAKEGFSISA PISSATSSFF SSLSAGDPSV TKGNGNPPLG  180
AAAAAAAGKP PPPPPPYKRK CPDHSAAASA GATKPSASAS RCHCSNKRYA IPQQKTVETL  240
AAHDSPHRAS PANARAPVTM RRKNRVKKTI RVPVTSSKIS DIPPDEYSWR KYGQKPIKGS  300
PHPRNYYKCS SVRGCPARKH VERAMDDPTV LVVTYEWEHR HTPNPAAPAQ SQPSIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20271341271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929316.11e-102PREDICTED: probable WRKY transcription factor 11
TrEMBLA0A0B4LB881e-101A0A0B4LB88_9ASPA; WRKY transcription factor
STRINGVIT_04s0069g00920.t012e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.21e-68WRKY DNA-binding protein 11